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Ejercicios de Aminoácidos y Proteínas, Ejercicios de Bioquímica

El documento contiene muchos problemas de conceptos y ejercicios sobre Aminoácidos y Proteínas. Como: Estado de ionización, Intercambio iónico y Peso de aminoácidos Todo con procedimientos y respuestas

Tipo: Ejercicios

2020/2021

Subido el 28/05/2021

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Hernández Ramírez Juan
Amino acids
Activity 2-Biochemistry
1. Ionization State of Histidine (4 points)
Each ionizable group of an amino acid can exist in one of two states, charged or neutral. The
electric charge on the functional group is determined by the relationship between its pKa and the
pH of the solution. This relationship is described by the Henderson-Hasselbalch equation.
a) Histidine has three ionizable functional groups. Write the equilibrium equations for its three
ionizations and assign the proper pKa for each ionization. Draw the structure of histidine in each
ionization state. What is the net charge on the histidine molecule in each ionization state?
Equilibrium Equations
𝑝𝐻 = 𝑝𝑘𝑎 + 𝑙𝑜𝑔 [𝐴−]
[𝐻𝐴]
Equation For Carboxyl Group.
𝑝𝐻 = 1.82 + 𝑙𝑜𝑔 [𝐶𝑂𝑂−]
[𝐶𝑂𝑂𝐻]
Equation for R group.
𝑝𝐻 = 6 + 𝑙𝑜𝑔 [𝑅]
[𝑅+]
Equation for amino group.
𝑝𝐻 = 9.17 + 𝑙𝑜𝑔 [𝑁𝐻2]
[𝑁𝐻2+]
First ionization state: +2
Second ionization state: +1
Third ionization state: 0
Fourth ionization state: -1
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Amino acids

Activity 2-Biochemistry

1. Ionization State of Histidine (4 points) Each ionizable group of an amino acid can exist in one of two states, charged or neutral. The electric charge on the functional group is determined by the relationship between its pKa and the pH of the solution. This relationship is described by the Henderson-Hasselbalch equation. a) Histidine has three ionizable functional groups. Write the equilibrium equations for its three ionizations and assign the proper pKa for each ionization. Draw the structure of histidine in each ionization state. What is the net charge on the histidine molecule in each ionization state?

Equilibrium Equations

[𝐴−]

[𝐻𝐴]

Equation For Carboxyl Group.

[𝐶𝑂𝑂−] [𝐶𝑂𝑂𝐻]

Equation for R group.

[𝑅] [𝑅+]

Equation for amino group.

[𝑁𝐻 2 ] [𝑁𝐻 2 +]

First ionization state: +

Second ionization state: +

Third ionization state: 0

Fourth ionization state: - 1

b) Draw the structures of the predominant ionization state of histidine at pH 1, 4, 8, and 12.

pH: 1-4 Acid pKa pH: 8-12 Base pKa

2. Ion exchange (3 points) You want to separate two peptides by ion exchange chromatography. At the pH of the mobile phase to be used on the column, one peptide (A) has a net charge of - 3 (minus three), due to the presence of more Glu and Asp residues than Arg, Lys, and His residues. Peptide B has a net charge of +1 (plus one). a) Which peptide would elute first from a cation-exchange resin? Peptide A (net charge - 3) would elute first because it will interact less strongly with the cation-exchange resin than Peptide B (net charge +1). b) Which would elute first from an anion-exchange resin? On the anion-exchange resin, peptide B (+1) will elute first. Peptide A, (-3) being negatively charged, will be retarded by its interaction with the positively charged resin. 3. Amino acid weight (1 point) What is the approximate molecular weight of a protein with 682 amino acid residues in a single polypeptide chain?

𝑀𝑜𝑙𝑒𝑐𝑢𝑙𝑎𝑟 𝑤𝑒𝑖𝑔ℎ𝑡 = 682(110) = 𝟕𝟓 , 𝟎𝟐𝟎 Da