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Transes in Microbiology, Transcriptions of Microbiology

Microbiology and Parasitology (Lecture) Transes

Typology: Transcriptions

2023/2024

Available from 02/22/2025

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MICROBIOLOGY AND PARASITOLOGY
BSCI 106 | CHAPTER 6AND 7: MICROBIAL PHYSIOLOGY AND GENETICS
SECOND SEMESTER | 2023-2024 | PROF: ELIJAH JOY SULADAY, MSC
KRISTEL ANNE M. MUYUELA | BSN 1P
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KRISTEL ANNE M. MUYUELA, BSN 1PRISTEL ANNE M. MUYUELA
1
Introduction
Physiology is the study of the vital life processes of organisms.
Microbial physiology concerns the vital life processes of
microorganisms. Scientists can learn about human cells by
studying the nutritional needs of bacteria, their metabolic
pathways, and why they live, grow, multiply, or die under certain
conditions. Bacteria, fungi, and viruses are used extensively in
genetic studies because they produce generation after generation
so rapidly.
Microbial Nutritional Requirements
All living protoplasm contains six major chemical elements:
carbon, hydrogen, oxygen, nitrogen, phosphorus, and sulfur
Combinations of these and other elements make up vital
macromolecules of life, including carbohydrates, lipids, proteins,
and nucleic acids.
Materials that organisms are unable to synthesize, but are
required for building macromolecules and sustaining life, are
termed essential nutrients (e.g., certain essential amino acids and
essential fatty acids).
Categorizing Microorganisms According To Their Energy And
Carbon Sources
Organism’s energy source:
>Phototrophs use light
>Chemotrophs use either inorganic or organic chemicals
a. Chemolithotrophs use inorganic chemicals
b. Chemoorganotrophs use organic chemicals
Organism’s carbon source:
>Autotrophs use carbon dioxide (CO2) as their sole source of
carbon.
>Heterotrophs use organic compounds other than CO2
Combine both energy and carbon source:
>Photoautotrophs use light (energy source) and CO2 (carbon
source)
>Photoheterotrophs use light (energy source) and organic
compounds other than CO2 (carbon source)
>Chemoautotrophs use chemicals (energy source) and CO2
(carbon source)
>Chemoheterotrophs use chemicals (energy source) and organic
compounds other than CO2 (carbon source)
Ecology is the study of the interactions between living
organisms and the world around them.
Ecosystem refers to the interactions between living organisms
and their nonliving environment.
Interrelationships among the different nutritional types are of
prime importance in the functioning of the ecosystem.
Example: Phototrophs, such as algae and plants, are the
producers of food and oxygen for chemoheterotrophs, such as
animals.
Metabolism refers to all of the chemical reactions that occur in
a cell. The chemical reactions are referred to as metabolic
reactions. Metabolic reactions are enhanced and regulated by
enzymes known as metabolic enzymes.
Biologic Catalysts
Enzymes are biologic catalysts; they are proteins that either
cause a particular chemical reaction to occur or accelerate it.
They are also specific, in that they catalyze only one particular
chemical reaction.
A particular enzyme can exert its effect on only one particular
substance, known as the substrate for that enzyme.
The unique three-dimensional shape of an enzyme enables it to
fit the combining site of the substrate like a key fits into a lock.
An enzyme does not become altered during the chemical
reaction it catalyzes. (They don’t last forever, however)
1.1 MICROBIAL PHYSIOLOGY
- Introduction
- Microbial Nutritional Requirements
- Categorizing Microorganisms According To Their
Energy And Carbon Sources
1.2 METABOLIC ENZYMES
- Biologic Catalysts
- Factors That Affect the Efficiency of Enzymes
1.3 METABOLISM
-Catabolism
-Anabolism
1.4 BACTERIAL GENETICS
-Mutations
-Ways in Which Bacteria Acquire New Genetic
Information
1.5 GENETIC ENGINEERING
1.6 GENE THERAPY
OUTLINE
1.1 MICROBIAL PHYSIOLOGY
1.2 METABOLIC ENZYMES
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BSCI 106 | CHAPTER 6 AND 7 : MICROBIAL PHYSIOLOGY AND GENETICS

SECOND SEMESTER | 2023-2024 | PROF: ELIJAH JOY SULADAY, MSC

KRISTEL ANNE M. MUYUELA | BSN 1P


Introduction Physiology is the study of the vital life processes of organisms. Microbial physiology concerns the vital life processes of microorganisms. Scientists can learn about human cells by studying the nutritional needs of bacteria, their metabolic pathways, and why they live, grow, multiply, or die under certain conditions. Bacteria, fungi, and viruses are used extensively in genetic studies because they produce generation after generation so rapidly. Microbial Nutritional Requirements  All living protoplasm contains six major chemical elements: carbon, hydrogen, oxygen, nitrogen, phosphorus, and sulfur Combinations of these and other elements make up vital macromolecules of life, including carbohydrates, lipids, proteins, and nucleic acids.  Materials that organisms are unable to synthesize, but are required for building macromolecules and sustaining life, are termed essential nutrients (e.g., certain essential amino acids and essential fatty acids). Categorizing Microorganisms According To Their Energy And Carbon Sources  Organism’s energy source:

Phototrophs use light Chemotrophs use either inorganic or organic chemicals a. Chemolithotrophs use inorganic chemicals b. Chemoorganotrophs use organic chemicals  Organism’s carbon source: Autotrophs use carbon dioxide (CO2) as their sole source of carbon. Heterotrophs use organic compounds other than CO  Combine both energy and carbon source: Photoautotrophs use light (energy source) and CO2 (carbon source) Photoheterotrophs use light (energy source) and organic compounds other than CO2 (carbon source) Chemoautotrophs use chemicals (energy source) and CO (carbon source) Chemoheterotrophs use chemicals (energy source) and organic compounds other than CO2 (carbon source)  Ecology is the study of the interactions between living organisms and the world around them.  Ecosystem refers to the interactions between living organisms and their nonliving environment.  Interrelationships among the different nutritional types are of prime importance in the functioning of the ecosystem. Example: Phototrophs, such as algae and plants, are the producers of food and oxygen for chemoheterotrophs, such as animals.  Metabolism refers to all of the chemical reactions that occur in a cell. The chemical reactions are referred to as metabolic reactions. Metabolic reactions are **enhanced and regulated by

enzymes** known as metabolic enzymes. Biologic CatalystsEnzymes are biologic catalysts; they are proteins that either cause a particular chemical reaction to occur or accelerate it. They are also specific, in that they catalyze only one particular chemical reaction.  A particular enzyme can exert its effect on only one particular substance, known as the substrate for that enzyme.  The unique three-dimensional shape of an enzyme enables it to fit the combining site of the substrate like a key fits into a lock.  An enzyme does not become altered during the chemical reaction it catalyzes. (They don’t last forever, however)

1.1 MICROBIAL PHYSIOLOGY

  • Introduction
  • Microbial Nutritional Requirements
  • Categorizing Microorganisms According To Their Energy And Carbon Sources 1.2 METABOLIC ENZYMES
  • Biologic Catalysts
  • Factors That Affect the Efficiency of Enzymes 1.3 METABOLISM -Catabolism -Anabolism 1.4 BACTERIAL GENETICS -Mutations -Ways in Which Bacteria Acquire New Genetic Information 1.5 GENETIC ENGINEERING 1.6 GENE THERAPY

OUTLINE

1.1 MICROBIAL PHYSIOLOGY

1.2 METABOLIC ENZYMES

BSCI 106 | CHAPTER 6 AND 7 : MICROBIAL PHYSIOLOGY AND GENETICS

SECOND SEMESTER | 2023-2024 | PROF: ELIJAH JOY SULADAY, MSC

KRISTEL ANNE M. MUYUELA | BSN 1P


Factors That Affect the Efficiency of Enzymes CatabolismEndoenzymes are enzymes produced within a cell that remain within the cell to catalyze reactions.  Exoenzymes are produced within a cell and then released outside of the cell to catalyze extracellular reactions.  Hydrolases and polymerases are examples of metabolic enzymes.  Each enzyme has an optimum pH and optimum temperature range at which it functions at peak efficiency.

Optimum pH rang e ⎯ efficiency can be adversely affected if too acidic or too alkaline. Optimum temperature range ⎯ efficiency can be affected if too hot or too cool. Optimum concentration of enzyme and/or substrate – concentration might be too high or too low. Presence of inhibitors (e.g., heavy metals such as lead, zinc, mercury, and arsenic) can affect efficiency.  A metabolite is any molecule that is a nutrient, an intermediary product, or an end product in a metabolic reaction.  Metabolic reactions fall into two categories : Catabolism and Anabolism  Energy can be temporarily stored in high-energy bonds in

special molecules, usually adenosine triphosphate (ATP). ATP molecules are found in all cells. When ATP is used as an energy source, it is hydrolyzed to adenosine diphosphate (ADP). If necessary, ADP can be used as an energy source by hydrolysis to adenosine monophosphate (AMP).  Much of the energy released during catabolic reactions is used to drive anabolic reactions.  Whenever chemical bonds are broken, energy is released. Catabolic reactions are a cell’s major source of energy. Some energy is lost as heat in catabolic reactions.  Biochemical pathways are a series of linked biochemical reactions occurring in a stepwise manner, from a starting material to an end product.

Compound A is ultimately converted to compound E. Four enzymes are required in this biochemical pathway. Compound A is the substrate for Enzyme 1, Compound B for Enzyme 2, etc.  Catabolism of glucose by aerobic respiration occurs in three phases (each is a biochemical pathway):

Glycolysis - anaerobic The Krebs cycle - aerobic The electron transport chain - aerobic  Glycolysis (also called the glycolytic pathway, the Embden– Meyerhof pathway and the Meyerhof–Parnas pathway) is a

1.3 METABOLISM

BSCI 106 | CHAPTER 6 AND 7 : MICROBIAL PHYSIOLOGY AND GENETICS

SECOND SEMESTER | 2023-2024 | PROF: ELIJAH JOY SULADAY, MSC

KRISTEL ANNE M. MUYUELA | BSN 1P


Genetic Engineering Transformation is probably not widespread in nature.  Conjugation

Involves a specialized type of pilus called a sex pilus. A bacterial cell with a sex pilus (called the donor cel l) attaches by means of the sex pilus to another bacterial cell (called the recipient cell ). Some genetic material (usually a plasmid ) is transferred from the donor cell to the recipient cell through a conjugative pore. A plasmid that contains multiple genes for antibiotic resistance is known as a resistance factor or R-facto r. A bacterial cell that receives an R-factor becomes a “ superbu g.” Conjugation in E.coliRecombinant DNA Technology  Involves techniques to transfer eukaryotic genes (particularly human genes ) into easily cultured cells to manufacture important gene products (mostly proteins ).  Plasmids are frequently used as vehicles for inserting genes

into cells.  There are many industrial and medical benefits from genetic engineering. Examples: synthesis of antibodies, antibiotics, drugs, and vaccines, as well as synthesis of important enzymes and hormones for treatment of diseases.

BSCI 106 | CHAPTER 6 AND 7 : MICROBIAL PHYSIOLOGY AND GENETICS

SECOND SEMESTER | 2023-2024 | PROF: ELIJAH JOY SULADAY, MSC

KRISTEL ANNE M. MUYUELA | BSN 1P


Gene TherapyGene therapy of human diseases involves the insertion of a normal gene into cells to correct a specific genetic disorder caused by a defective gene.  Viral delivery is the most common method for inserting genes into cells; specific viruses are selected to target the DNA of specific cells.  Genes may someday be regularly prescribed as “ drugs ” in the treatment of diseases (e.g., autoimmune diseases, sickle cell anemia, cancer, cystic fibrosis, heart disease, etc.)

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