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Introduction to Cell Components & Membrane Function, Study notes of Biochemistry

An overview of cell biology, focusing on the structure and function of the cell, including the role of the plasma membrane and the presence of organelles such as mitochondria, chloroplasts, and the endoplasmic reticulum. It covers topics like cell theory, cell size, the plasma membrane, the nucleus, protein synthesis, and the endomembrane system.

Typology: Study notes

2022/2023

Available from 03/28/2024

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BIOCHEMISTRY TRANSES
Lecture/First Semester
THE CELL AND ITS CHEMISTRY
Cells
- Basic functional and structural unit of life
- All living things are composed of cells, cell parts,
or cell products
- Organisms may be:
- Unicellular: prokaryotes
- Multicellular: human
Cell theory
- All organisms are composed of one or more cells.
- Cells are the smallest living units of all living
organisms.
- Cells arise only by division of a previously existing
cell.
- Cells vary in size and shapes.
Cell Requirements
- Genetic material
-Single circular molecule of DNA in
prokaryotes
-Double helix located in nucleus in
eukaryotes
- Cytoplasm
-Fills cell interior (sugars, amino acids,
proteins, organelles)
- Plasma Membrane
-Encloses the cell
Cell Size
- Most cells are relatively small because as size
increases, volume increases much more rapidly.
- Cell size and shape are related cell functions.
A Scale of Visibility
Classification of Cells
There are two major types of cells
- Prokaryotic
-lacks a nucleus and does not have an
extensive system of internal membranes
- all bacteria and archaea have this cell
type
- Eukaryotic
- has a nucleus and has internal
membrane-bounded compartments
- all organisms other than bacteria or
archaea have this cell type
Prokaryotic Cells
Prokaryotes are the simplest cellular organisms. They
have a plasma membrane surrounding a cytoplasm without
interior compartments (some bacteria have additional outer
layers to the plasma membrane)
-Cell wall - comprised of carbohydrates to confer rigid
structure
-Capsule may surround the cell wall
-Cytoplasm is uniform with little or no internal support
framework
-Ribosomes (sites for protein synthesis) are scattered
throughout the cytoplasm
-Nucleoid region (an area of the cell where DNA is
localized)
- not membrane-bounded, so not a true nucleus
-Flagellum (plural, flagellae) is a threadlike structure
made of protein fibers that extends from the cell
surface
- may be one or many
- aids in locomotion and feeding
-Pilus (plural, pili) is a short flagellum
- aids in attaching to substrates and in
exchanging genetic information between cells
Eukaryotic Cells
Eukaryotic cells are larger and more complex than
prokaryotic cells. They have a plasma membrane encasing the
cytoplasm, internal membranes form compartments called
organelles. The cytoplasm is semi-fluid and contains a network
of protein fibers that form a scaffold called a cytoskeleton.
-Nucleus - a membrane-bounded compartment for DNA
that gives eukaryotes (literally, “true-nut”) their name
- Endomembrane system - gives rise to the internal
membranes found in the cell. Each compartment can
provide specific conditions favoring a particular
process.
- The cells of plants, fungi, and many protists have a cell
wall beyond the plasma membrane
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Lecture/First Semester

THE CELL AND ITS CHEMISTRY

Cells

  • Basic functional and structural unit of life
  • All living things are composed of cells, cell parts,

or cell products

  • Organisms may be: - Unicellular: prokaryotes - Multicellular: human

Cell theory

  • All organisms are composed of one or more cells.
  • Cells are the smallest living units of all living

organisms.

  • Cells arise only by division of a previously existing

cell.

  • Cells vary in size and shapes.

Cell Requirements

- Genetic material - Single circular molecule of DNA in

prokaryotes

- Double helix located in nucleus in

eukaryotes

- Cytoplasm - Fills cell interior (sugars, amino acids,

proteins, organelles)

- Plasma Membrane - Encloses the cell

Cell Size

  • Most cells are relatively small because as size

increases, volume increases much more rapidly.

  • Cell size and shape are related cell functions.

A Scale of Visibility

Classification of Cells

There are two major types of cells

- Prokaryotic - lacks a nucleus and does not have an

extensive system of internal membranes

  • all bacteria and archaea have this cell

type

- Eukaryotic - has a nucleus and has internal

membrane-bounded compartments

  • all organisms other than bacteria or

archaea have this cell type

Prokaryotic Cells Prokaryotes are the simplest cellular organisms. They have a plasma membrane surrounding a cytoplasm without interior compartments ( some bacteria have additional outer layers to the plasma membrane )

  • Cell wall - comprised of carbohydrates to confer rigid structure
  • Capsule may surround the cell wall
  • Cytoplasm is uniform with little or no internal support framework
  • Ribosomes (sites for protein synthesis) are scattered throughout the cytoplasm
  • Nucleoid region (an area of the cell where DNA is localized) - not membrane-bounded, so not a true nucleus
  • Flagellum (plural, flagellae) is a threadlike structure made of protein fibers that extends from the cell surface - may be one or many - aids in locomotion and feeding
  • Pilus (plural, pili) is a short flagellum
    • aids in attaching to substrates and in exchanging genetic information between cells Eukaryotic Cells Eukaryotic cells are larger and more complex than prokaryotic cells. They have a plasma membrane encasing the cytoplasm, internal membranes form compartments called organelles. The cytoplasm is semi-fluid and contains a network of protein fibers that form a scaffold called a cytoskeleton.
  • Nucleus - a membrane-bounded compartment for DNA that gives eukaryotes (literally, “true-nut”) their name - Endomembrane system - gives rise to the internal membranes found in the cell. Each compartment can provide specific conditions favoring a particular process.
  • The cells of plants, fungi, and many protists have a cell wall beyond the plasma membrane

Lecture/First Semester

  • All plants and many protists contain organelles called chloroplasts
  • Plants contain a central vacuole - only animal cells contain centrioles The Plasma Membrane The plasma membrane is conceptualized by the fluid mosaic model –a sheet of lipids with embedded proteins. The lipid layer forms the foundation of the membrane. The fat molecules comprising the lipid layers are called phospholipids.
  • A phospholipid has a polar head and two non- polar tails
  • The polar region contains a phosphate chemical group and is water-soluble
  • The non-polar region is comprised of fatty acids and is water-insoluble
  • A lipid bilayer forms spontaneously whenever a collection of phospholipids is placed in water
  • The interior of the lipid bilayer is completely nonpolar
  • no water-soluble molecules can freely cross through it
  • cholesterol is also found in the interior
  • it affects the fluid nature of the membrane
  • its accumulation in the walls of blood vessels can cause plaques
  • plaques lead to cardiovascular disease
  • Another major component of the membrane is a collection of membrane proteins
  • some proteins form channels that span the membrane
  • these are called transmembrane proteins
  • other proteins are integrated into the structure of the membrane
  • for example, cell surface proteins are attached to the outer surface of the membrane and act as markers
  • Proteins are embedded within the lipid bilayer The Nucleus: The Cell’s Control Center
  • The nucleus is the command and control center of the cell
  • it also stores hereditary information
  • The nuclear surface is bounded by a double- membrane called the nuclear envelope
  • groups of proteins form openings called nuclear pores that permit proteins and RNA to pass in and out of the nucleus

Lecture/First Semester Organelles That Harvest Energy

  • Eukaryotic cells contain energy harvesting organelles that contain their own DNA - these organelles appear to have been derived from ancient bacteria that were taken up by eukaryotic cells - these organelles include mitochondria and chloroplasts
  • Mitochondria are cellular powerhouses
  • Sites for chemical reactions called oxidative metabolism
  • The organelle is surrounded by two membranes
  • Chloroplasts are the sites of photosynthesis
  • The organelle is also surrounded by two membranes
  • Both mitochondria and chloroplasts possess their own molecule of circular DNA
  • They cannot be grown free of the cell
    • they are totally dependent on the cells within which they occur
  • The theory of endosymbiosis
    • states that some organelles evolved from a symbiosis in which one cell of a prokaryotic species was engulfed by and lived inside of a cell of another species of prokaryote that was a precursor to eukaryotes
    • the engulfed species provided their hosts with advantages because of special metabolic activities
    • the modern organelles of mitochondria and chloroplasts are believed to be found in the eukaryotic descendants of these endosymbiotic prokaryotes - In addition to the double membranes and circular DNA found in mitochondria and chloroplasts, there is a lot of other evidence supporting endosymbiotic theory - mitochondria are about the same size as modern bacteria - the cristae in mitochondria resemble folded membranes in modern bacteria - mitochondrial ribosomes are similar to modern bacterial ribosomes in size and structure - mitochondria divide by fission, just like modern bacteria The Cytoskeleton and Related Structures
  • The cytoskeleton is comprised of an internal framework of protein fibers that
  • anchors organelles to fixed locations
  • supports the shape of the cell
  • helps organize ribosomes and enzymes needed for synthesis activities
  • The cytoskeleton is dynamic and its components are continually being rearranged
  • Three different types of protein fibers comprise the cytoskeleton - Intermediate filaments
  • thick ropes of intertwined protein - Microtubules
  • hollow tubes made up of the protein tubulin - Microfilaments
  • long, slender microfilaments made up of the protein actin The protein fibers of the cytoskeleton
  • Centrioles are complex structures that assemble microtubules in animal cells and the cells of most protists
  • they occur in pairs
  • they are found near the nuclear envelope

Lecture/First Semester

  • they are composed of microtubules
  • Cellular motion is associated with the movement of actin microfilaments and/or microtubules
  • some cells “crawl” by coordinating the rearrangement of actin microfilaments
  • some cells swim by coordinating the beating of microtubules grouped together to form flagella or cilia
  • Cilia and Flagella are hairlike structures projecting from the cell that function to move the cell by their movements
  • Cilium (Cilia) - the short, numerous appendages
  • Flagellum (Flagella) – the longer, less numerous appendages Eukaryotic Cell Surfaces and Junctions
  • Cells interact with their environments and with each other via their surfaces.
  • Plant cells are supported by rigid cell walls made largely of cellulose.
  • Plant cells connected by plasmodesmata.
  • Animal cells are embedded in an extracellular matrix consisting mainly of glycoprotein. This matrix is responsible for binding cells together in tissues.
  • Manufacture
  • Nucleus, ribosomes, RER, SER, Golgi complex
  • Breakdown
  • Lysosomes, peroxisomes, vacuoles
  • Energy Processing
  • Chloroplasts, mitochondria
  • Support, Movement and Communication Between Cells
  • Cytoskeleton, cell walls, extracellular matrix, junctions **Transport of Materials
  • Passive Transport:** does not require energy. Moves along concentration gradient - Diffusion - Osmosis - Facilitated Diffusion - Active Transport: requires energy.
  • Endocytosis
  • Exocytosis Diffusion and Osmosis
  • Movement of water and nutrients into a cell or elimination of wastes out of cell is essential for survival
  • This movement occurs across a biological membrane in one of three ways
  • diffusion
  • membrane folding
  • transport through membrane proteins
  • Molecules move in a random fashion but there is a tendency to produce uniform mixtures
  • The net movement of molecules from an area of higher concentration to an area of lower concentration is termed diffusion

Lecture/First Semester

  • water temperature changes slowly and holds temperature well
  • Ice Formation
  • few hydrogen bonds break at low temperatures
  • water becomes less dense as it freezes because hydrogen bonds stabilize and hold water molecules farther apart
  • High Heat of Vaporization
  • water requires tremendous energy to vaporize because of all the hydrogen bonds that must be broken
  • when water vaporizes, it takes this heat energy with it, allowing for evaporative cooling Ice formation
  • Water molecules are attracted to other polar Molecules
  • cohesion – when one water molecule is attracted to another water molecule
  • adhesion – when polar molecules other than water stick to a water molecule
  • High polarity
  • in solution, water molecules tend to form the maximum number of hydrogen bonds
  • hydrophilic molecules are attracted to water and dissolve easily in it
  • these molecules are also polar and can form hydrogen bonds
  • hydrophobic molecules are repelled by water and do not dissolve
  • these molecules are nonpolar and do not form hydrogen bonds Water Ionizes
  • The covalent bond within a water molecule sometimes breaks spontaneously

H2O ↔ OH- + H+

  • This produces a positively hydrogen ion (H+) and a negatively charged hydroxide ion (OH-)
  • The amount of ionized hydrogen from water in a solution can be measured as pH
  • The pH scale is logarithmic , which means that a pH scale difference of 1 unit actually represents a 10-fold change in hydrogen ion concentration
  • Pure water has a pH of 7
    • there are equal amounts of [H+] relative to [OH-]
  • Acid – any substance that dissociates in water
  • and increases the [H+]
    • acidic solutions have pH values below 7
  • Base – any substance that combines with [H+] when dissolved in water - basic solutions have pH values above 7
  • The pH in most living cells and their environments is fairly close to 7 (6.9–7.3) - proteins involved in metabolism are sensitive to any pH changes
  • Organisms use buffers to minimize pH disturbances

Lecture/First Semester

  • a buffer is a chemical substance that takes up or releases hydrogen ions Organic compounds Biomolecules - associated with living things. Organic molecules - Carbohydrates – major source of energy (a.k.a. sugars)
  • Proteins – for tissue repair
  • Lipids – constituents of membranes, also a source of energy (a.k.a. Oils and fats)
  • Nucleic Acids – genetic material and for protein synthesis