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Introduction to Biochemistry: A Historical Overview and Key Concepts, Study notes of Biochemistry

An overview of biochemistry, a field of science that explores the chemistry of life. It covers the history of biochemistry, the challenge to vitalism, and the discoveries of key scientists. Topics include the chemistry of life, the origins of biochemistry, the central dogma, and areas of biochemistry. Biochemical reactions such as oxidation, reduction, condensation, hydrolysis, and transfer reactions are also discussed.

Typology: Study notes

2022/2023

Available from 03/28/2024

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BIOCHEMISTRY
PRELIMINARY SY. 2023-2024
Lecture/First Semester
INTRODUCTION TO BIOCHEMISTRY
Biochemistry
- Chemistry of life
- Study of life processes, structures, mechanisms,
reactions at the molecular level
- Chemistry, Biology, & Genetics
Vitalism Theory
- Idea that substances and processes associated
with living organisms did not behave according
to the known laws of physics and chemistry
- Organic vs. Inorganic
Evidences for Vitalism
- Only living things have a high degree of
complexity
- Only living things extract, transform and utilize
energy from their environment
- Only living things are capable of self assembly
and self replication
Origins of Biochemistry: a challenge to vitalism and…
Famous Dead Scientists
1. Friedrich Wohler (19th century)
-Synthesized urea from inorganic
substance—ammonium cyanate.
2. Eduard Buchner and Hans Buchner (1897)
-found that glucose + dead yeast cells are
still able to undergo fermentation,
demonstrating that reactions can occur in
vitro.
3. Emil Fischer (1894)
- Each enzyme can only catalyze specific
complex molecules called substrates.
- proposed the lock and key theory, which
states that enzymes have a specific
shape that directly correlates to the shape
of the substrate.
4. James Batcheller Sumner
- studied the enzyme urease, which breaks
down urea into ammonia and carbon
dioxide
- An enzyme is protein
5. Gregor Mendel (mid-1900)
- Started describing genes.
- Father of Genetics
6. Oswald Avery, Colin McLeod, Maclyn McCarty
(1944)
- identified DNA as information molecules
7. James Watson (still alive) and Francis Crick
(1953)
- proposed the structure of the DNA
- In 1958 Crick proposed the central
dogma of biology
Central Dogma
- Flow of information
- DNA -> RNA (mRNA) -> Protein
- Replication -> Transcription -> Translation
Areas of Biochemistry
- Biomolecules. Structure and function of biological
macromolecules
- Metabolism
- Catabolism: Destructive phase
- Complex substance to subunits
(simpler substance)
- Anabolism: Constructive phase
- From simpler substance to
complex substance
- Molecular Genetics
- How life is replicated
- Regulation of protein synthesis
Objective of Biochemistry
- determine how the collections of inanimate
molecules that constitute living organisms interact
with each other to maintain and perpetuate life
Scope of Biochemistry
- LIFE. chemistry of living matter in its different
phases of activity, from the smallest
microorganisms such as viruses to the most
complex ones as human
- Virus: has either DNA or RNA
- Cell: has both DNA and RNA
Chemical Reactions Occurring in Living Organism
Oxidation
- gains oxygen or loses hydrogen/electron
aerobic oxidation takes place in the
presence of oxygen
anaerobic oxidation occurs in the
absence of oxygen
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BIOCHEMISTRY

PRELIMINARY SY. 2023-

Lecture/First Semester

INTRODUCTION TO BIOCHEMISTRY

Biochemistry

  • Chemistry of life
  • Study of life processes, structures, mechanisms, reactions at the molecular level
  • Chemistry, Biology, & Genetics Vitalism Theory
  • Idea that substances and processes associated with living organisms did not behave according to the known laws of physics and chemistry
  • Organic vs. Inorganic Evidences for Vitalism
  • Only living things have a high degree of complexity
  • Only living things extract, transform and utilize energy from their environment
  • Only living things are capable of self assembly and self replication Origins of Biochemistry: a challenge to vitalism and… **Famous Dead Scientists
  1. Friedrich Wohler** (19th century) - Synthesized urea from inorganic substance—ammonium cyanate. 2. Eduard Buchner and Hans Buchner (1897) - found that glucose + dead yeast cells are still able to undergo fermentation, demonstrating that reactions can occur in vitro. 3. Emil Fischer (1894)
  • Each enzyme can only catalyze specific complex molecules called substrates.
  • proposed the lock and key theory, which states that enzymes have a specific shape that directly correlates to the shape of the substrate. 4. James Batcheller Sumner
  • studied the enzyme urease, which breaks down urea into ammonia and carbon dioxide
  • An enzyme is protein 5. Gregor Mendel (mid-1900)
  • Started describing genes.
  • Father of Genetics 6. Oswald Avery, Colin McLeod, Maclyn McCarty (1944)
  • identified DNA as information molecules 7. James Watson (still alive) and Francis Crick (1953)
  • proposed the structure of the DNA
  • In 1958 Crick proposed the central dogma of biology Central Dogma
  • Flow of information
  • DNA -> RNA (mRNA) -> Protein
  • Replication -> Transcription -> Translation Areas of Biochemistry
  • Biomolecules. Structure and function of biological macromolecules
  • Metabolism - Catabolism : Destructive phase
  • Complex substance to subunits (simpler substance) - Anabolism: Constructive phase
  • From simpler substance to complex substance
  • Molecular Genetics
  • How life is replicated
  • Regulation of protein synthesis Objective of Biochemistry
  • determine how the collections of inanimate molecules that constitute living organisms interact with each other to maintain and perpetuate life Scope of Biochemistry
  • LIFE. chemistry of living matter in its different phases of activity, from the smallest microorganisms such as viruses to the most complex ones as human - Virus: has either DNA or RNA - Cell: has both DNA and RNA Chemical Reactions Occurring in Living Organism Oxidation
  • gains oxygen or loses hydrogen/electron ⇀ aerobic oxidation – takes place in the presence of oxygen ⇀ anaerobic oxidation – occurs in the absence of oxygen

Reduction

  • gains hydrogen/electron or loses oxygen Condensation
  • Dehydration synthesis(union)
  • Removal of water Hydrolysis
  • Lysis = splitting
  • Large molecules broken down Transfer Reactions a. Phosphorylation - addition of phosphate group b. Transamination - transfer of amino group c. Acetylation - addition of acyl group d. Transmethylation - transfer of methyl group Decarboxylation
  • Removal of carboxyl group Uses of Biochemistry The results of biochemical research are used extensively in the world outside the laboratory
  • Agriculture
  • Pharmacology and Toxicology
  • Medical Sciences
  • Clinical Chemistry
  • Nutrition