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Excercise, exam, dna recombinant
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Đề bài: Xây dựng vecto pHT43 sản xuất enzyme nattokinase có đuôi His ở đầu C ở Bacillus subtilis bằng Gibson và Golden Gate Vùng inhibitor là vùng ức chế cần loại bỏ
D25319.1:181-1326 Bacillus natto subtilisin gene, complete cds aTGAGAAGCAAAAAATTGTGGATCAGCTTGTTGTTTGCGTTAACGTTAATCTTTACGATGGCGTTCAGCA ACATGTCTGCGCAGGCTGCCGGAAAAAGCAGTACAGAAAAGAAATACATTGTCGGATTTAAGCAGACAAT GAGTGCCATGAGTTCCGCCAAGAAAAAGGATGTTATTTCTGAAAAAGGCGGAAAGGTTCAAAAGCAATTT AAGTATGTTAACGCGGCCGCAGCAACATTGGATGAAAAAGCTGTAAAAGAATTGAAAAAAGATCCGAGCG TTGCATATGTGGAAGAAGATCATATTGCACATGAATAT GCGCAATCTGTTCCTTATGGCATTTCTCAAATTAAAGCGCCGGCTCTTCACTCTCAAGGCTACACAGGCTCTAACGT AAAAGTAGCTGTTATCGACAGCGGAATTGACTCTTCTCATCCTGACTTAAACGTCAGAGGCGGAGCAAGCTTCGTTC CTTCTGAAACAAACCCATACCAGGACGGCAGTTCTCACGGTACGCATGTCGCCGGTACGATTGCCGCTCTTAATAAC TCAATCGGTGTTCTGGGCGTAGCGCCAAGCGCATCATTATATGCAGTAAAAGTGCTTGATTCAACAGGAAGCGGCCA ATATAGCTGGATTATTAACGGCATTGAGTGGGCCATTTCCAACAATATGGATGTTATCAACATGAGCCTTGGCG GACCTACTGGTTCTACAGCGCTGAAAACAGTAGTTGATAAAGCGGTTTCCAGCGGTATCGTCGTTGCTGC CGCAGCCGGAAACGAAGGTTCATCCGGAAGCACAAGCACAGTCGGCTACCCTGCAAAATATCCTTCTACT ATTGCAGTAGGTGCGGTAAACAGCAGCAACCAAAGAGCTTCATTCTCCAGCGTAGGTTCTGAGCTTGATG TAATGGCTCCTGGCGTGTCCATCCAAAGCACACTTCCTGGAGGCACTTACGGCGCTTATAACGGAACGTC CATGGCGACTCCTCACGTTGCCGGAGCAGCAGCGCTAATTCTTTCTAAGCACCCGACTTGGACAAACGCG CAAGTCCGTGATCGTTTAGAAAGCACTGCAACATATCTTGGAAACTCTTTCTACTATGGAAAAGGGTTAA TCAACGTACAAGCAGCTGCACAA TAA Đuôi His đầu C xóa mã kết thúc trong gen Mã khởi đầu có thể là GTG,TTG => muốn biểu hiện mạnh đưa về ATG LEFT PRIMER 1 21 60.27 52.38 0.30 0.00 0. GCGCAATCTGTTCCTTATGGC RIGHT PRIMER 825 20 60.81 50.00 36.61 0.00 42. TTGTGCAGCTGCTTGTACGT pHT43 ( chèn gen vào vecto phải đảo đoạn dưới lên trên ) GTAGGATCCTCTAGAGTCGACGTCCCCGGGGCAGCCCGCCTAATGAGCGGGCTTTTTTCACGTC ACGCGTCCATGGAGATCTTTGTCTGCAACTGAAAAGTTTATACCTTACCTGGAACAAATGGTTG AAACATACGAGGCTAATATCGGCTTATTAGGAATAGTCCCTGTACTAATAAAATCAGGTGGATC AGTTGATCAGTATATTTTGGACGAAGCTCGGAAAGAATTTGGAGATGACTTGCTTAATTCCACA ATTAAATTAAGGGAAAGAATAAAGCGATTTGATGTTCAAGGAATCACGGAAGAAGATACTCATG ATAAAGAAGCTCTAAAACTATTCAATAACCTTACAATGGAATTGATCGAAAGGGTGGAAGGTTA ATGGTACGAAAATTAGGGGATCTACCTAGAAAGCCACAAGGCGATAGGTCAAGCTTAAAGAACC CTTACATGGATCTTACAGATTCTGAAAGTAAAGAAACAACAGAGGTTAAACAAACAGAACCAAA AAGAAAAAAAGCATTGTTGAAAACAATGAAAGTTGATGTTTCAATCCATAATAAGATTAAATCG CTGCACGAAATTCTGGCAGCATCCGAAGGGAATTCATATTACTTAGAGGATACTATTGAGAGAG CTATTGATAAGATGGTTGAGACATTACCTGAGAGCCAAAAAACTTTTTATGAATATGAATTAAA AAAAAGAACCAACAAAGGCTGAGACAGACTCCAAACGAGTCTGTTTTTTTAAAAAAAATATTAG GAGCATTGAATATATATTAGAGAATTAAGAAAGACATGGGAATAAAAATATTTTAAATCCAGTA AAAATATGATAAGATTATTTCAGAATATGAAGAACTCTGTTTGTTTTTGATGAAAAAACAAACA
I. Golden Gate
pHT43_fwd ggctac cacctgc gcct acaa CACCACCATCATCACCAC TAG GTAGGATCCTCTAGAGTC pHT43_rev ggctac cacctgc taat agga acagattgcgc GGCTGATGTTTTTGTAATC GGCTACCACCTGCGCCT ACAACACCACCATCATCACCACGTAGGATCCTCTAGAGTCNNNGATTACAAAAACATCAGCCGCGCAATCTGT TCCTATTAGCAGGTGGTAGCC CCGATGGTGGACGCGGATGTT GTGGTGGTAGTAGTGGTGCATCCTAGGAGATCTCAGNNNCTAATGTTTTTGTAGTCGGCGCGTTAGACAAGGA TAATCGTCCACCATCGG (Gắn đuôi His đầu C vào mồi F vecto; mã kết thúc vào mồi F) Đuôi His đầu C => thêm vào mồi R của gen nhưng nếu thế bị cắt mất => thêm vào mồi F vecto ) aprN_fwd ggctac cacctgc taat tcct TATGGCATTTCTCAAATTAAAG aprN_rev ggctac cacctgc gcct ttgt GCAGCTGCTTGTAC GGCTACCACCTGCTAAT TCCTTATGGCATTTCTCAAATTAAAGNNNGTACAAGCAGCTGC ACAAAGGCGCAGGTGGTAGCC CCGATGGTGGACGATTAAGGA ATACCGTAAAGAGTTTAATTTCNNNCATGTTCGTCGACGTGTT TCCGCGTCCACCATCGG (Gắn đuôi His đầu C vào mồi F vecto) Đuôi His đầu C => thêm vào mồi R của gen nhưng nếu thế bị cắt mất => thêm vào mồi F vecto )
TTTH GATTACAAAAACATCAGCCGCGCAATCTGT TCCTTATGGCATTTCTCAAATTAAAG CGCCGGCTCTTCACTCTCAAGGCTACACAGGCTCTAACGTAAAAGTAGCTGTTATCGACAGCGGAATTGACTCTTCT CATCCTGACTTAAACGTCAGAGGCGGAGCAAGCTTCGTTCCTTCTGAAACAAACCCATACCAGGACGGCAGTTCTCA CGGTACGCATGTCGCCGGTACGATTGCCGCTCTTAATAACTCAATCGGTGTTCTGGGCGTAGCGCCAAGCGCATCAT TATATGCAGTAAAAGTGCTTGATTCAACAGGAAGCGGCCAATATAGCTGGATTATTAACGGCATTGAGTGGGCCATT TCCAACAATATGGATGTTATCAACATGAGCCTTGGCG GACCTACTGGTTCTACAGCGCTGAAAACAGTAGTTGATAAAGCGGTTTCCAGCGGTATCGTCGTTGCTGC CGCAGCCGGAAACGAAGGTTCATCCGGAAGCACAAGCACAGTCGGCTACCCTGCAAAATATCCTTCTACT ATTGCAGTAGGTGCGGTAAACAGCAGCAACCAAAGAGCTTCATTCTCCAGCGTAGGTTCTGAGCTTGATG TAATGGCTCCTGGCGTGTCCATCCAAAGCACACTTCCTGGAGGCACTTACGGCGCTTATAACGGAACGTC CATGGCGACTCCTCACGTTGCCGGAGCAGCAGCGCTAATTCTTTCTAAGCACCCGACTTGGACAAACGCG CAAGTCCGTGATCGTTTAGAAAGCACTGCAACATATCTTGGAAACTCTTTCTACTATGGAAAAGGGTTAA TCAACGTACAAGCAGCTGC ACAACACCACCATCATCACCACTAG Pro tth ITKTSAAQSVPYGISQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLNVRGGASFVPSETNPYQ DGSSHGTHVAGTIAALNNSIGVLGVAPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMDVIN MSLGGPTGSTALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRA SFSSVGSELDVMAPGVSIQSTLPGGTYGAYNGTSMATPHVAGAAALILSKHPTWTNAQVRDRLE STATYLGNSFYYGKGLINVQAAAQHHHHHH II. Gibson pHT