Docsity
Docsity

Prepare for your exams
Prepare for your exams

Study with the several resources on Docsity


Earn points to download
Earn points to download

Earn points by helping other students or get them with a premium plan


Guidelines and tips
Guidelines and tips

Cell Culture Basics: Plate, split, and freeze human cells (LABSTER), Exercises of Cellular and Molecular Biology

Cell Culture Basics: Plate, split, and freeze human cells (LABSTER)

Typology: Exercises

2021/2022

Available from 07/11/2023

mickaela-ballesteros-1
mickaela-ballesteros-1 🇵🇭

8 documents

1 / 4

Toggle sidebar

This page cannot be seen from the preview

Don't miss anything!

bg1
BIO 150
E1 | Cell Culture Basics: Plate, split, and freeze human cells
LABSTER
Cell culture is when scientists remove cells from an organism and grow
them in artificial environment, often a petri dish or other container in a
lab. This allows the scientist to perform experiments on the cells in a
controlled environment.
Q: What is one of the advantages of using cell cultures?
A: It’s an easy and highly cost-effective tool to study life sciences
- This is an excellent tool for researchers in their study of
different diseases in order to manufacture vaccines, select
drugs, improve gene therapy or understand disease
mechanisms. But it has many other applications, such as
producing recombinant proteins.
Q: Why is cell culture referred to as in vitro?
A: Because it’s a process performed outside a living organism
-In vitro refers to the study of cells or biomolecules outside
their normal biological context.
Q: For adherent cells, what does adhesion provide?
A: All options (A signal to grow and divide; A signal to enhance
survival; A signal to transduce differentiation signals)
- Adhesion initiates important signaling cascades that are
important for adherent cells. This is the main reason we use
special coated flasks for culturing cells.
First mission is to prepare the reagents.
When culturing cells, we have to provide them different essential
nutrients. Like we eat everyday, cells need to get enough energy to
keep growing.
These nutrients usually come from the basal culture medium and
serum. They are stored in the fridge-freezer to preserve the integrity of
their components.
The basal culture medium is a liquid that generally contains amino
acids, carbohydrates, (water-soluble) vitamins, and minerals. (+ trace
elements)
RPMI-1640 is widely used for suspension cells like lymphocytes. It can
look pink or colorless, depending on if it contains phenol red or not.
Conditioned medium (a special type of medium) is made from any
used medium that still has nutritional value, usually after being in
contact with cells. It has many applications, such as cell differentiation
induction, or delivery of engineered viruses and even therapeutical
agents.
DMEM (Dulbecco’s Modified Eagle Medium) one of the most
used culture mediums to grow adherent cells. Besides its basic
components, it also has phenol red which acts as pH indicator and also
protects media from damage by light. (Medium to be used)
___ This medium is formulated specifically for the growth of
pluripotent stem cells and provides essential nutrients that keep their
pluripotency intact. It also contains phenol red.
Q: Why is L-glutamine an important amino acid in cell culture?
A: Because cells get much of their energy from its catabolism
- L-glutamine is catabolized into a compound directly involved
in the Krebs cycle. Therefore, it helps cells produce most of
the energy they need to keep growing.
Q: What is the function of phenol red?
A: Indicate ph and protect from light
- Cells gro well in a pH around 7.4 and can tolerate little
variations but not drastic changes.
- Phenol red indicated pH by changing the medium color: it
turns yellow when pH decreases below 6.8 and it turns pink
when pH increases above 8.0
- This is a good way to keep track of the health of the cells.
Q: What is conditioned media useful for?
A: Eliciting cellular responses
- Conditioned media can help cells grow a bit faster.
- Besides providing the basic nutrients to cells, it also has
many other growth factors that were secreted by the cells
previously cultivated in this medium. THerefore, it can
promote the growth of cells that grow slower than needed.
Q: What are the optimal conditions to store cell culture media?
A: At 4 °C in the dark
- It’s important to store the culture media inside the fridge to
preserve their components as more stable as possible.
Otherwise, some of them could be degraded affecting the
cell growth.
Sometimes we need to add serum to the culture medium.
Serum, such as fetal bovine serum (FBS) usually comes from animal
fetuses because it has a high concentration of growth factors and
hormones that will stimulate the cells to grow and divide.
Q: What is one of the important components of the serum?
A: Growth factors
Q: What is the best way to store the serum?
A: In aliquots, frozen at -20 °C in a non-frost free freezer
- To avoid many freeze-thaw cycles and therefore ensure the
preservation of its components.
Q: Why do we have to pre-warm all the reagents we need to use at
37 °C?
A: To avoid thermal shock to cells
- We should leave the reagents in the water bath for up to 30
mins to warm up.
The airflow hood protects the working environment from dust and other
airborne contaminants by maintaining a constant, uni-directionsl flow of
filtered air over the work area.
Remember that every time you put something inside the hood it must
first be rinsed with 70% ethanol. This is to kill any contaminants that
might be sitting on the outside of the medium bottle from the fridge, the
water bath or the lab bench. Using aseptic technique is careful work.
Q: What is the atmosphere inside an air flow hood like?
A: Very clean but not absolutely sterile
- High Efficiency Particulate Air (HEPA) filters are responsible
for the clean atmosphere inside the hood, but it’s not 100%
sterile.
Q: How must the sash, the adjustable transparent cover, of the air
flow good be set?
A: At an indicated level when in use
Q: Which rule must you follow when working with animal cells in
an air flow hood?
A: Never open any item outside of the hood
- Work using aseptic technique to avoid any type of
contamination in your culture. This means that the opening
of any item must always happen inside the hood.
Q: What is the main characteristic of a vessel specifically
designed to culture adherent cells, such as fibroblasts?
A: The surface is specifically coated
- We can culture adherent cells in these flasks because one of
the polystyrene surfaces of the flask is chemically treated to
promote cell adhesion. Otherwise, these types of cells would
not survive.
STEP:
1. Remove 50 mL of medium from the DMEM bottle using the pipette
controller and serological pipettes.
2. Discard the medium into the disposal bottle and discard the
serological pipette in the trash bin.
3. Add 50 mL of serum to the DMEM culture medium bottle using a
new serological pipette.
pf3
pf4

Partial preview of the text

Download Cell Culture Basics: Plate, split, and freeze human cells (LABSTER) and more Exercises Cellular and Molecular Biology in PDF only on Docsity!

BIO 150

E1 | Cell Culture Basics: Plate, split, and freeze human cells LABSTER Cell culture is when scientists remove cells from an organism and grow them in artificial environment, often a petri dish or other container in a lab. This allows the scientist to perform experiments on the cells in a controlled environment. Q: What is one of the advantages of using cell cultures? A: It’s an easy and highly cost-effective tool to study life sciences

  • This is an excellent tool for researchers in their study of different diseases in order to manufacture vaccines, select drugs, improve gene therapy or understand disease mechanisms. But it has many other applications, such as producing recombinant proteins. Q: Why is cell culture referred to as in vitro****? A: Because it’s a process performed outside a living organism
  • In vitro refers to the study of cells or biomolecules outside their normal biological context. Q: For adherent cells, what does adhesion provide? A: All options (A signal to grow and divide; A signal to enhance survival; A signal to transduce differentiation signals)
  • Adhesion initiates important signaling cascades that are important for adherent cells. This is the main reason we use special coated flasks for culturing cells. First mission is to prepare the reagents. When culturing cells, we have to provide them different essential nutrients. Like we eat everyday, cells need to get enough energy to keep growing. These nutrients usually come from the basal culture medium and serum. They are stored in the fridge-freezer to preserve the integrity of their components. The basal culture medium is a liquid that generally contains amino acids, carbohydrates, (water-soluble) vitamins, and minerals. (+ trace elements) RPMI-1640 is widely used for suspension cells like lymphocytes. It can look pink or colorless, depending on if it contains phenol red or not. Conditioned medium (a special type of medium) is made from any used medium that still has nutritional value, usually after being in contact with cells. It has many applications, such as cell differentiation induction, or delivery of engineered viruses and even therapeutical agents. DMEM (Dulbecco’s Modified Eagle Medium) — one of the most used culture mediums to grow adherent cells. Besides its basic components, it also has phenol red which acts as pH indicator and also protects media from damage by light. (Medium to be used) ___ — This medium is formulated specifically for the growth of pluripotent stem cells and provides essential nutrients that keep their pluripotency intact. It also contains phenol red. Q: Why is L-glutamine an important amino acid in cell culture? A: Because cells get much of their energy from its catabolism
  • L-glutamine is catabolized into a compound directly involved in the Krebs cycle. Therefore, it helps cells produce most of the energy they need to keep growing. Q: What is the function of phenol red? A: Indicate ph and protect from light
  • Cells gro well in a pH around 7.4 and can tolerate little variations but not drastic changes.
  • Phenol red indicated pH by changing the medium color: it turns yellow when pH decreases below 6.8 and it turns pink when pH increases above 8.
  • This is a good way to keep track of the health of the cells. Q: What is conditioned media useful for? A: Eliciting cellular responses
  • Conditioned media can help cells grow a bit faster.
  • Besides providing the basic nutrients to cells, it also has many other growth factors that were secreted by the cells previously cultivated in this medium. THerefore, it can promote the growth of cells that grow slower than needed. Q: What are the optimal conditions to store cell culture media? A: At 4 °C in the dark
  • It’s important to store the culture media inside the fridge to preserve their components as more stable as possible. Otherwise, some of them could be degraded affecting the cell growth. Sometimes we need to add serum to the culture medium. Serum, such as fetal bovine serum (FBS) usually comes from animal fetuses because it has a high concentration of growth factors and hormones that will stimulate the cells to grow and divide. Q: What is one of the important components of the serum? A: Growth factors Q: What is the best way to store the serum? A: In aliquots, frozen at -20 °C in a non-frost free freezer
  • To avoid many freeze-thaw cycles and therefore ensure the preservation of its components. Q: Why do we have to pre-warm all the reagents we need to use at 37 °C? A: To avoid thermal shock to cells
  • We should leave the reagents in the water bath for up to 30 mins to warm up. The airflow hood protects the working environment from dust and other airborne contaminants by maintaining a constant, uni-directionsl flow of filtered air over the work area. Remember that every time you put something inside the hood it must first be rinsed with 70% ethanol. This is to kill any contaminants that might be sitting on the outside of the medium bottle from the fridge, the water bath or the lab bench. Using aseptic technique is careful work. Q: What is the atmosphere inside an air flow hood like? A: Very clean but not absolutely sterile
  • High Efficiency Particulate Air (HEPA) filters are responsible for the clean atmosphere inside the hood, but it’s not 100% sterile. Q: How must the sash, the adjustable transparent cover, of the air flow good be set? A: At an indicated level when in use Q: Which rule must you follow when working with animal cells in an air flow hood? A: Never open any item outside of the hood
  • Work using aseptic technique to avoid any type of contamination in your culture. This means that the opening of any item must always happen inside the hood. Q: What is the main characteristic of a vessel specifically designed to culture adherent cells, such as fibroblasts? A: The surface is specifically coated
  • We can culture adherent cells in these flasks because one of the polystyrene surfaces of the flask is chemically treated to promote cell adhesion. Otherwise, these types of cells would not survive. STEP:
  1. Remove 50 mL of medium from the DMEM bottle using the pipette controller and serological pipettes.
  2. Discard the medium into the disposal bottle and discard the serological pipette in the trash bin.
  3. Add 50 mL of serum to the DMEM culture medium bottle using a new serological pipette.

Q: Why is this now called complete medium? A: Because it supplies all components cells need to grow

  • A complete medium is the resulting medium after adding serum, which contains growth factors and hormones, to the basal medium, which provides amino acids, minerals and vitamins. That’s everything cells need to survive and proliferate. Q: Does a complete medium need to be placed at -20 °C for long-term storage after its use? A: No. Complete medium should not be frozen
  • You should store complete medium at 4 °C and for no more than two to four weeks to ensure that all the components still remain active and to avoid their precipitation. Q: Can we add antibiotics to our complete medium? A: Only when necessary
  • The use of antibiotics depends on the researcher’s needs and the experiment, since they can be toxic to certain cell lines. Therefore, it’s recommended to perform a dose-response test before using them. STEP:
  1. Add complete medium to the flask using a new serological pipette. With the flask ready, you can see the fibroblast on it. Seeding cells means placing them inside of a proper vessel with all the required conditions for proper growth Q: How should we thaw the cells? A: Quickly, in a 37 °C water bath
  • You want to thaw cells quickly, so the ice crystals disappear very fast, avoiding the possibility of damaging the cell membrane. This is the opposite idea of freezing. Before seeding the cells there’s one more important thing you need to know: Every cell line prepared to work in vitro needs to be verified by a regulatory entity, for instance the STCC in the US. This provides an authentication certificate to ensure the researcher is using that specific cell line. Q: What is the cell line authentication? A: The studies proving the lineage and lack of contamination of our cells
  • It’s important to authenticate the cell line we’re working with in order ti ensure we have reliable results. This could be crucial to define our next step in our research. Q: Which of the following methods is not recommended to verify a human cell line by the regulatory entity? A: DNA sequencing
  • Recommended: Mycoplasma detection, Growth curve analysis, STR analysis
  • DNA sequencing is not a useful tool since it requires too much time and it’s important to verify cell lines as soon as possible. That’s why when using DNA to verify a human cell line, it’s recommended to use STR analysis. STR stands for short-tandem repeat. This technique is faster and depending on the cell line, the genetic markers would be different. Once the cells are seeded they need to be cultured under controlled temperature and atmosphere conditions. In the case of mammalian cells these conditions are 37 °C of temperature in a humidified atmosphere with 5% CO2. Take the flask to the incubator to allow the cells to start proliferating! Q: What does the cell culture environment include? A: All of them (Media and media components; the gas composition; the plastic the cells are attached to)
  • To culture adherent cells we need all of this. All are equally important and complementary to ensure proper cell culture health and growth. Q: Why is sodium bicarbonate added to cell culture medium? A: Because it helps maintain the correct pH when CO2 is present
  • Sodium bicarbonate present in the culture media acts as buffer to balance extracellular pH. Growth Curve The growth of cells in culture proceeds from the lag phase following seeding to the log phase, where the cells proliferate exponentially. When adherent cells occupy all the available substrate and have no room left for expansion, cell proliferation is greatly reduced or ceases entirely due to contact inhibition. This is what we call confluency. Q: Why is a growth curve analysis important? A: All (Because you can establish a cell doubling time; They allow you to see changes in growth patterns over time; They give a record of growth)
  • Proper follow up of culture and analysis of the growth curve will give use plenty of information to optimize sub-culturing, but can also to detect any anomalies. Q: At which phase of the growth curve should we keep the cells growing? A: Log phase
  • We need to maintain our cells in the log phase to ensure their metabolism remains stable. Otherwise, we would experience some problems regarding the growth rate of the cells, in this situation we may have to use conditioned media to overcome this. Q: What do cell surface proteins that promote cell-to-cell contact cause? A: Stop proliferating due to contact inhibition
  • When surface proteins of cultured cells make contact with each other, they promote different signaling cascades that lead to a decrease in cell movement and proliferation.
  • In the case of cancer cells, this doesn’t happen and therefore, it’s one of the topics pursued by researchers. We also need to follow up on our culture to see the cell growth. It’s recommended to have a look at it everyday under the microscope, and to re-feed the cells exchanging the complete medium every certain amount of time depending on the cell line. Since our fibroblasts have a doubling time of around 18h, we need to wait 4 days to perform cell passage. Q: What is confluency? A: The ratio of the area occupied by cells to the total available space 27. Q: Do cells need to be fed only if they have reached confluency? A: No, you should feed them according to their growth
  • It’s convenient to re-feed your cells with complete medium, using a frequency related to their growth.
  • Some cells need to be re-fed everyday but others can be re-fed every 2-3 days before sub-culturing. This will ensure the optimal health of your culture. 28. Q: Take a look at the cells on the computer screen. What type of morphology do they have? A: Fibroblastic
  • These cells are bipolar or multipolar and have elongated shapes. Q: Do you think these cells are ready to be sub-cultured? A: Yes! They have reached around 80% confluency
  • The optimal point to perform the cell passage is when the cells are between 70-90% confluent, so it’s important they don’t reach the stationary phase. You can confirm this by observing some gaps between cells.

Q: What are the basics of sterile technique for a researcher? A: All (Maintain a very clean environment; Use only sterile reagents; Use serological pipettes only once) Q: What is it important to remember when working in the air flow hood? A: All (Minimizing quick movement; Not introducing contamination; Wiping the hood down with 70% ethanol) Q: What is important to remember when trying to maintain your cell culture growth? A: Sub-culturing it before cells reach confluence

  • If you remember the growth curve we need to sub-culture our cells before the stationary phase. Otherwise, they will have problems growing after the new seeding Q: If we mix Trypan Blue with a cell suspension 1:1 and count 240 viable cells in the Neubauer chamber (4 sets of 16 squares), how many viable cells do we have per mL? A: 1.2 x 10^6 cells/mL Q: Which are the best ways to thaw and freeze cells? A: Quickly and slowly respectively
  • We thaw cells quickly at 37 deg C and freeze them slowly at a rate of 1 deg C per minute. These methods ensure that ice crystals can't damage the cells. WORKSHEET 1
  1. What is the objective of the simulation? The objective of the simulation is to be able to culture mammalian cells by applying cell passaging and cryopreservation, while also following the aseptic technique.
  2. Give examples of basic aseptic techniques used in cell culture. a. Wear a complete set of protective gear such as lab coats and gloves. b. Carry out the procedures inside a laminar flow hood. c. Everything that will be put inside the hood must be rinsed with 70% ethanol. d. Opening of any item must always happen inside the hood.
  3. What is an in vitro experiment? An in vitro (Latin for “in glass”) experiment refers to an experiment done outside of a living organism, traditionally with the use of test tubes, Petri dishes, and flasks. While an in vivo (Latin for “within the living”) experiment pertains to an experiment carried out inside a whole and living organism, such as in clinical trials. In vitro experiments usually involve the examination of cells (e.g., animal, human, bacteria) in culture, for instance, tests for antibiotic susceptibility of bacteria in a Petri dish (Seladi-Schulman, 2019). According to Graudejus et al. (2018), some advantages of in vitro experiments include the control of the physical and chemical environment, less use of animals, and reduced cost. However, a weakness of experiments done in vitro is the failure to imitate cell conditions inside living organisms. Thus, outcomes need to be carefully treated.
  4. What are the components of complete media? Complete media are media composed of all the required nutrients and materials for the growth of an organism. It usually contains both basal medium and other supplements like cell culture supplements, fetal bovine serum, and antibiotics, to ensure the purity of the culture (Samanthi, 2019).
  5. What is the purpose of the following: a. Dissociation medium? Once cells begin to release toxic metabolites as they consume the nutrients in the medium, a dissociation medium can be used to produce a new culture from a subset of adherent cells which detach from their flask once exposed to the medium. Afterwards, the aforementioned cells can be quantified with a cell counter or hemocytometer. The subgroup of cells can then be seeded onto a new flask and be resupplied with more nutrients in a fresh medium (Segeritz & Vallier, 2017). b. PBS? Phosphate buffered saline (PBS) is a non-toxic salt solution composed of potassium phosphate, sodium phosphate, and sodium chloride. Its main purpose is to balance the concentration of salt around cells. Therefore, preventing the rupturing or shriveling of cells because of osmosis. PBS is used in washing cells, diluting cells, and preparation of reagents (Martin et al., 2006). c. Trypan blue? Trypan blue is commonly used as a staining agent. It is cell membrane impermeable, thus will not enter the cell unless the membranes are damaged. When it enters the cell, it will bind to intracellular proteins, giving the cell a blue appearance (Creative Bioarray, 2022). d. DMSO? It is one of the most used cryoprotectant agents because it reduces the freezing point of the medium. This reduces the risk of ice crystal formation, which can damage cells and cause cell death.
  6. What are the minimum requirements for growing cells in culture? The most common requirements for cell culturing is that aseptic techniques must be used in maintaining the collected specimen. A nutrient source, particularly a basal culture medium and serum is a must as these materials promote the growth and proliferation of the cell culture. Cell cultures will also need favorable growth conditions which is achieved through the manipulation of environmental factors such as temperature, humidity and pH levels of the culture. Mammalian cell lines persist in temperatures of around 36-37°C. While their ideal pH levels should be approximately 7.2-7.4, which can be controlled through the use of the appropriate buffers (Segeritz & Vallier, 2017).
  7. How do you quantify or count the cells? Counting cells can be done manually or automatically. To count the cells manually, a hemocytometer, a tool with Neubauer grids, is to be used. To count the cells automatically, an automated cell counter—which provides a quick count and ratio of the dead and alive cells is to be used.
  8. What are some of the applications of mammalian cell culture? Nowadays, mammalian cell culture is used to test and assess the effects of toxins, and drugs on animal cell components in order to ascertain the extent of their potentially mutagenic, and carcinogenic properties (Invitrogen, n.d.). Cell cultures are also vital in the production of biological therapeutic compounds found in vaccines and other significant biological products (Verma, Verma, & Singh, 2020).